Welcome to Awsomics!                  

What's Awsomics?

Awsomics is an online framework that promotes exploratory and reproducible analysis of complex genomic data and facilitates knowledge discovery in the process of biomedical research. Its targeted users are biomedical scientists who want to incorporate enormous genomic data in public repositories into their research, but lack time and resource to do so. Awsomics is available as a Shiny Web Server running on Amazon Web Service (AWS) instance.

    Awsomics has three major components:
  •   - Rchive, the backend collection of currated genomic data;
  •   - a Shiny web server that hosts a series of bioinformatics APPs;
  •   - and bioinformatics methods implemented by the APPs to enable integrative analysis of multiple data sets and data types.


Contact:

Jim Zhe Zhang
Department of Biomedical and Health Informatics
The Children's Hospital of Philadelphia

APPs


Rchive    Ready-to-use genomic data


RNA-seq 2G    2-group differential expression


GeEx    Gene expression Explorer


GSA-Genie    Gene Set Analysis & collections


U-GIC    User-Guided Iterative Clustering


Scatter    Interactive scatter plot


Bar    Interactive bar plot



Projects


  SLE1    2015-09, H3K4me3 peak breadth in SLE


  CdLS1    2016-10, CdLS-specific expression


  Mito1    2016-11, Antioxidant drugs


  SLE2    2017-10, Multiple immune cells of SLE